PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00052g06028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12601.8 Da    PI: 10.6715
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00052g06028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.8e-27959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krie+ks rqv f+kRr+g+lKKA+E+S+LCd++vav++fs+ g+ly++ss
  Peinf101Scf00052g06028.1  9 KRIEEKSSRQVAFCKRRKGLLKKAKEISILCDIDVAVVVFSNLGRLYDFSS 59
                              79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.595161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-26166IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGRKKVEIKR IEEKSSRQVA FCKRRKGLLK KAKEISILCD IDVAVVVFSN LGRLYDFSSN  60
HSLQGGALIV QAFMKIQGTE QFKGVRGGMS KSQQINNLGY NNRKELIFYL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-16160160Myocyte-specific enhancer factor 2B
1tqe_Q5e-16160160Myocyte-specific enhancer factor 2B
1tqe_R5e-16160160Myocyte-specific enhancer factor 2B
1tqe_S5e-16160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705232e-60AY370523.1 Petunia x hybrida MADS-box protein 17 (PMADS17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795053.13e-31PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_016435773.13e-31PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_009795052.14e-31PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
RefseqXP_016435771.14e-31PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
SwissprotQ2QW534e-24MAD13_ORYSJ; MADS-box transcription factor 13
SwissprotQ8RU314e-24MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLQ6UGR16e-33Q6UGR1_PETHY; MADS-box protein 6 (Fragment)
TrEMBLQ6UGR26e-33Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRINGPGSC0003DMT4000458026e-29(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2492922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.16e-19AGAMOUS-like 44